vtkClariusTest.cxx

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/*=Plus=header=begin======================================================
  Program: Plus
  Copyright (c) Laboratory for Percutaneous Surgery. All rights reserved.
  See License.txt for details.
=========================================================Plus=header=end*/

#include "PlusConfigure.h"
#include "vtkPlusClarius.h"
#include "vtkPlusDataSource.h"
#include "vtkCallbackCommand.h"
#include "vtkChartXY.h"
#include "vtkCommand.h"
#include "vtkContextScene.h"
#include "vtkContextView.h"
#include "vtkFloatArray.h"
#include "vtkImageData.h"
#include "vtkImageViewer.h"
#include "vtkInformation.h"
#include "vtkInformationVector.h"
#include "vtkPlot.h"
#include "vtkRenderWindow.h"
#include "vtkRenderWindowInteractor.h"
#include "vtkRenderer.h"
#include "vtkSmartPointer.h"
#include "vtkTable.h"
#include "vtkTableAlgorithm.h"
#include "vtkXMLUtilities.h"
#include "vtksys/CommandLineArguments.hxx"
#include <stdlib.h>

//----------------------------------------------------------------------------

enum DisplayMode
{
  SHOW_IMAGE,
  SHOW_PLOT
};

//----------------------------------------------------------------------------

class vtkExtractImageRow : public vtkTableAlgorithm
{
public:
  static vtkExtractImageRow* New();
  vtkTypeMacro(vtkExtractImageRow, vtkTableAlgorithm);
  void PrintSelf(ostream& os, vtkIndent indent)
  {
    this->Superclass::PrintSelf(os, indent);
  }

  // Description:
  // Specify the first vtkGraph input and the second vtkSelection input.
  int FillInputPortInformation(int port, vtkInformation* info)
  {
    if (port == 0)
    {
      info->Set(vtkAlgorithm::INPUT_REQUIRED_DATA_TYPE(), "vtkImageData");
      return 1;
    }
    return 0;
  }

protected:
  vtkExtractImageRow()
  {
    this->SetNumberOfInputPorts(1);
  }
  virtual ~vtkExtractImageRow()
  {
  }

  int RequestData(vtkInformation* vtkNotUsed(request), vtkInformationVector** inputVector, vtkInformationVector* outputVector)
  {
    vtkImageData* inputImage = vtkImageData::GetData(inputVector[0]);
    vtkInformation* outInfo = outputVector->GetInformationObject(0);
    vtkTable* outputTable = vtkTable::SafeDownCast(outInfo->Get(vtkDataObject::DATA_OBJECT()));

    if (!inputImage)
    {
      LOG_ERROR("No input image is available");
      return 0;
    }

    // Create the tables if they haven't been created yet
    if (outputTable->GetColumnByName("time") == NULL)
    {
      vtkSmartPointer<vtkFloatArray> arrXnew = vtkSmartPointer<vtkFloatArray>::New();
      arrXnew->SetName("time");
      outputTable->AddColumn(arrXnew);
    }
    if (outputTable->GetColumnByName("RF value") == NULL)
    {
      vtkSmartPointer<vtkFloatArray> arrRfValNew = vtkSmartPointer<vtkFloatArray>::New();
      arrRfValNew->SetName("RF value");
      outputTable->AddColumn(arrRfValNew);
    }

    if (inputImage->GetScalarType() != VTK_SHORT)
    {
      LOG_ERROR("Plotting is only supported for signed short data");
      return 0;
    }
    int rowCount = inputImage->GetDimensions()[1]; // number of transducer crystals
    int numPoints = inputImage->GetDimensions()[0]; // number of data points (RF data values) recorded for one crystal
    int selectedRow = rowCount / 2; // plot the center column of the image
    short* pixelBuffer = reinterpret_cast<short*>(inputImage->GetScalarPointer()) + selectedRow * numPoints;

    outputTable->SetNumberOfRows(numPoints);
    int timeIndex = numPoints - 1; // the RF data set starts with the latest time
    for (int i = 0; i < numPoints; ++i)
    {
      outputTable->SetValue(i, 0, timeIndex);
      short value = *pixelBuffer;
      outputTable->SetValue(i, 1, value);
      pixelBuffer++;
      timeIndex--;
    }

    return 1;
  }

private:
  vtkExtractImageRow(const vtkExtractImageRow&); // Not implemented
  void operator=(const vtkExtractImageRow&);   // Not implemented
};

vtkStandardNewMacro(vtkExtractImageRow);

//---------------------------------------------------------------------------------

class vtkMyPlotCallback : public vtkCommand
{
public:
  static vtkMyPlotCallback *New() { return new vtkMyPlotCallback; }

  virtual void Execute(vtkObject *caller, unsigned long eventId, void* callData)
  {
    if (eventId == vtkCommand::KeyPressEvent)
    {
      if (m_Interactor->GetKeyCode() == 'q')
      {
        m_Interactor->ExitCallback();
      }
      return;
    }

    m_ImageToTableAdaptor->Update();
    m_Viewer->Render();
    //update the timer so it will trigger again
    m_Interactor->CreateTimer(VTKI_TIMER_UPDATE);
  }

  vtkRenderWindowInteractor *m_Interactor;
  vtkContextView *m_Viewer;
  vtkExtractImageRow *m_ImageToTableAdaptor;

private:

  vtkMyPlotCallback()
  {
    m_Interactor = NULL;
    m_Viewer = NULL;
    m_ImageToTableAdaptor = NULL;
  }
};

//----------------------------------------------------------------------------
void TestLinePlot(vtkPlusClarius *ClariusDevice)
{
  // Set up a 2D scene, add an XY chart to it
  vtkSmartPointer<vtkContextView> view = vtkSmartPointer<vtkContextView>::New();
  view->GetRenderer()->SetBackground(1.0, 1.0, 1.0);
  view->GetRenderWindow()->SetSize(640, 480);
  vtkSmartPointer<vtkChartXY> chart = vtkSmartPointer<vtkChartXY>::New();
  view->GetScene()->AddItem(chart);

  vtkSmartPointer<vtkExtractImageRow> imageToTableAdaptor = vtkSmartPointer<vtkExtractImageRow>::New();
  imageToTableAdaptor->SetInputConnection(ClariusDevice->GetOutputPort());
  imageToTableAdaptor->Update();

  // Add multiple line plots, setting the colors etc
  vtkPlot *line = chart->AddPlot(vtkChart::LINE);
  line->SetInputData(imageToTableAdaptor->GetOutput(), 0, 1);
  line->SetColor(0, 255, 0, 255);
  line->SetWidth(1.0);

  vtkSmartPointer<vtkMyPlotCallback> call = vtkSmartPointer<vtkMyPlotCallback>::New();
  call->m_Interactor = view->GetInteractor();
  call->m_Viewer = view;
  call->m_ImageToTableAdaptor = imageToTableAdaptor;

  view->GetInteractor()->Initialize();

  view->GetInteractor()->AddObserver(vtkCommand::TimerEvent, call);
  view->GetInteractor()->CreateTimer(VTKI_TIMER_FIRST);

  view->GetInteractor()->AddObserver(vtkCommand::KeyPressEvent, call);

  view->GetInteractor()->Start();

}

//---------------------------------------------------------------------------------

class vtkMyCallback : public vtkCommand
{
public:
  static vtkMyCallback *New() { return new vtkMyCallback; }

  virtual void Execute(vtkObject *caller, unsigned long, void*)
  {
    m_Viewer->Render();

    //update the timer so it will trigger again
    m_Interactor->CreateTimer(VTKI_TIMER_UPDATE);
  }

  vtkRenderWindowInteractor *m_Interactor;
  vtkImageViewer *m_Viewer;

private:

  vtkMyCallback()
  {
    m_Interactor = NULL;
    m_Viewer = NULL;
  }
};

//-------------------------------------------------------------------------------------------

int main(int argc, char* argv[])
{
  bool printHelp(false);
  // bool renderingOff(false);
  bool printParams(true);
  std::string inputConfigFile = "Testing/PlusDeviceSet_DataCollectionOnly_Clarius.xml";

  std::string acqMode("B");

  vtksys::CommandLineArguments args;
  args.Initialize(argc, argv);

  int verboseLevel = vtkPlusLogger::LOG_LEVEL_UNDEFINED;

  args.AddArgument("--help", vtksys::CommandLineArguments::NO_ARGUMENT, &printHelp, "Print this help.");
  args.AddArgument("--config-file", vtksys::CommandLineArguments::EQUAL_ARGUMENT, &inputConfigFile, "Config file containing the device configuration.");
  args.AddArgument("--verbose", vtksys::CommandLineArguments::EQUAL_ARGUMENT, &verboseLevel, "Verbose level 1=error only, 2=warning, 3=info, 4=debug, 5=trace)");

  if (!args.Parse())
  {
    std::cerr << "Problem parsing arguments" << std::endl;
    std::cout << "\n\nvtkPlusSonixVideoSourceTest1 help:" << args.GetHelp() << std::endl;
    exit(EXIT_FAILURE);
  }

  vtkPlusLogger::Instance()->SetLogLevel(5);


  vtkSmartPointer<vtkPlusClarius> ClariusDevice = vtkSmartPointer<vtkPlusClarius>::New();
  ClariusDevice->SetDeviceId("VideoDevice");

  // Read config file
  if (STRCASECMP(inputConfigFile.c_str(), "") != 0)
  {
    LOG_DEBUG("Reading config file...");
    vtkSmartPointer<vtkXMLDataElement> configRead = vtkSmartPointer<vtkXMLDataElement>::Take(::vtkXMLUtilities::ReadElementFromFile(inputConfigFile.c_str()));
    LOG_DEBUG("Reading config file finished.");
    if (configRead != NULL)
    {
      ClariusDevice->ReadConfiguration(configRead);
    }
  }

  ClariusDevice->CreateDefaultOutputChannel(NULL, true);
  vtkPlusDataSource* videoSource = NULL;
  if (ClariusDevice->GetFirstActiveOutputVideoSource(videoSource) != PLUS_SUCCESS)
  {
    LOG_ERROR("Unable to retrieve the video source.");
    exit(EXIT_FAILURE);
  }
  videoSource->SetInputImageOrientation(US_IMG_ORIENT_UN);

  DisplayMode displayMode = SHOW_IMAGE;
  //DisplayMode displayMode=SHOW_PLOT;

  if (STRCASECMP(acqMode.c_str(), "B") == 0)
  {
    LOG_DEBUG("Acquisition mode: B");
    //ClariusDevice->SetImagingMode(BMode);
    displayMode = SHOW_IMAGE;
  }

  else
  {
    LOG_ERROR("Unsupported AcquisitionDataType requested: " << acqMode);
    exit(EXIT_FAILURE);
  }

  if (ClariusDevice->Connect() != PLUS_SUCCESS)
  {
    LOG_ERROR("Unable to connect to Telemed device");
    exit(EXIT_FAILURE);
  }

  // Show the live ultrasound image in a VTK renderer window

  vtkSmartPointer<vtkImageViewer> viewer = vtkSmartPointer<vtkImageViewer>::New();
  viewer->SetInputConnection(ClariusDevice->GetOutputPort());   //set image to the render and window
  viewer->SetColorWindow(255);
  viewer->SetColorLevel(127.5);
  viewer->SetZSlice(0);

  //Create the interactor that handles the event loop
  vtkSmartPointer<vtkRenderWindowInteractor> iren = vtkSmartPointer<vtkRenderWindowInteractor>::New();
  iren->SetRenderWindow(viewer->GetRenderWindow());
  viewer->SetupInteractor(iren);

  viewer->Render(); //must be called after iren and viewer are linked or there will be problems

  // Establish timer event and create timer to update the live image
  vtkSmartPointer<vtkMyCallback> call = vtkSmartPointer<vtkMyCallback>::New();
  call->m_Interactor = iren;
  call->m_Viewer = viewer;
  iren->AddObserver(vtkCommand::TimerEvent, call);
  iren->CreateTimer(VTKI_TIMER_FIRST);

  //iren must be initialized so that it can handle events
  iren->Initialize();
  iren->Start();



  ClariusDevice->Disconnect();
  return EXIT_SUCCESS;
}