PlusLib
2.9.0
Software library for tracked ultrasound image acquisition, calibration, and processing.
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Interface to a 3D positioning tool, video source, or generalized data stream. More...
#include <src/PlusDataCollection/vtkPlusDataSource.h>
Public Types | |
typedef vtkObject | Superclass |
Public Member Functions | |
virtual PlusStatus | AddItem (vtkImageData *frame, US_IMAGE_ORIENTATION usImageOrientation, US_IMAGE_TYPE imageType, long frameNumber, double unfilteredTimestamp=UNDEFINED_TIMESTAMP, double filteredTimestamp=UNDEFINED_TIMESTAMP, const igsioFieldMapType *customFields=NULL) |
virtual PlusStatus | AddItem (const igsioVideoFrame *frame, long frameNumber, double unfilteredTimestamp=UNDEFINED_TIMESTAMP, double filteredTimestamp=UNDEFINED_TIMESTAMP, const igsioFieldMapType *customFields=NULL) |
virtual PlusStatus | AddItem (void *imageDataPtr, US_IMAGE_ORIENTATION usImageOrientation, const FrameSizeType &frameSizeInPx, igsioCommon::VTKScalarPixelType pixelType, unsigned int numberOfScalarComponents, US_IMAGE_TYPE imageType, int numberOfBytesToSkip, long frameNumber, double unfilteredTimestamp=UNDEFINED_TIMESTAMP, double filteredTimestamp=UNDEFINED_TIMESTAMP, const igsioFieldMapType *customFields=NULL) |
virtual PlusStatus | AddItem (void *imageDataPtr, const FrameSizeType &frameSize, unsigned int frameSizeInBytes, US_IMAGE_TYPE imageType, long frameNumber, double unfilteredTimestamp=UNDEFINED_TIMESTAMP, double filteredTimestamp=UNDEFINED_TIMESTAMP, const igsioFieldMapType *customFields=NULL) |
virtual PlusStatus | AddItem (const igsioFieldMapType &customFields, long frameNumber, double unfilteredTimestamp=UNDEFINED_TIMESTAMP, double filteredTimestamp=UNDEFINED_TIMESTAMP) |
PlusStatus | AddTimeStampedItem (vtkMatrix4x4 *matrix, ToolStatus status, unsigned long frameNumber, double unfilteredTimestamp, double filteredTimestamp=UNDEFINED_TIMESTAMP, const igsioFieldMapType *customFields=NULL) |
virtual void | Clear () |
void | DeepCopy (const vtkPlusDataSource &source) |
virtual PlusStatus | DeepCopyBufferTo (vtkPlusBuffer &bufferToFill) |
virtual int | GetBufferSize () |
virtual const char * | GetClassName () |
std::array< int, 3 > | GetClipRectangleOrigin () const |
std::array< int, 3 > | GetClipRectangleSize () const |
std::string | GetCustomProperty (const std::string &propertyName) |
vtkPlusDevice * | GetDevice () |
virtual double | GetFrameRate (bool ideal=false, double *framePeriodStdevSecPtr=NULL) |
US_IMAGE_TYPE | GetImageType () |
virtual ItemStatus | GetIndex (const BufferItemUidType uid, unsigned long &index) |
FrameSizeType | GetInputFrameSize () const |
virtual US_IMAGE_ORIENTATION | GetInputImageOrientation () |
virtual ItemStatus | GetItemUidFromTime (double time, BufferItemUidType &uid) |
virtual bool | GetLatestItemHasValidFieldData () |
virtual bool | GetLatestItemHasValidTransformData () |
virtual bool | GetLatestItemHasValidVideoData () |
virtual BufferItemUidType | GetLatestItemUidInBuffer () |
virtual ItemStatus | GetLatestStreamBufferItem (StreamBufferItem *bufferItem) |
virtual ItemStatus | GetLatestTimeStamp (double &latestTimestamp) |
virtual double | GetLocalTimeOffsetSec () |
int | GetNumberOfBytesPerPixel () |
virtual int | GetNumberOfItems () |
virtual unsigned int | GetNumberOfScalarComponents () |
virtual BufferItemUidType | GetOldestItemUidInBuffer () |
virtual ItemStatus | GetOldestStreamBufferItem (StreamBufferItem *bufferItem) |
virtual ItemStatus | GetOldestTimeStamp (double &oldestTimestamp) |
virtual FrameSizeType | GetOutputFrameSize () const |
virtual PlusStatus | GetOutputFrameSize (unsigned int &_arg1, unsigned int &_arg2, unsigned int &_arg3) const |
virtual US_IMAGE_ORIENTATION | GetOutputImageOrientation () |
virtual igsioCommon::VTKScalarPixelType | GetPixelType () |
std::string | GetSourceId () const |
virtual double | GetStartTime () |
virtual ItemStatus | GetStreamBufferItem (BufferItemUidType uid, StreamBufferItem *bufferItem) |
virtual ItemStatus | GetStreamBufferItemFromTime (double time, StreamBufferItem *bufferItem, vtkPlusBuffer::DataItemTemporalInterpolationType interpolation) |
virtual ItemStatus | GetTimeStamp (BufferItemUidType uid, double ×tamp) |
bool | GetTimeStampReporting () |
virtual PlusStatus | GetTimeStampReportTable (vtkTable *timeStampReportTable) |
std::string | GetTransformName () const |
virtual int | IsA (const char *type) |
virtual PlusStatus | ModifyBufferItemFrameField (BufferItemUidType uid, const std::string &key, const std::string &value) |
virtual void | PrintSelf (ostream &os, vtkIndent indent) VTK_OVERRIDE |
virtual PlusStatus | ReadConfiguration (vtkXMLDataElement *toolElement, bool requirePortNameInSourceConfiguration=false, bool requireImageOrientationInChannelConfiguration=false, const std::string &aDescriptiveNameForBuffer=std::string("")) |
virtual PlusStatus | SetBufferSize (int n) |
void | SetClipRectangleOrigin (const std::array< int, 3 > _arg) |
void | SetClipRectangleSize (const std::array< int, 3 > _arg) |
void | SetCustomProperty (const std::string &propertyName, const std::string &propertyValue) |
void | SetDevice (vtkPlusDevice *_arg) |
virtual void | SetFrameNumber (unsigned long) |
PlusStatus | SetId (const char *aSourceId) |
PlusStatus | SetId (const std::string &aSourceId) |
PlusStatus | SetImageType (US_IMAGE_TYPE imageType) |
PlusStatus | SetInputFrameSize (unsigned int x, unsigned int y, unsigned int z) |
PlusStatus | SetInputFrameSize (const FrameSizeType &frameSize) |
virtual PlusStatus | SetInputImageOrientation (US_IMAGE_ORIENTATION imageOrientation) |
virtual void | SetLocalTimeOffsetSec (double offsetSec) |
PlusStatus | SetNumberOfScalarComponents (unsigned int numberOfScalarComponents) |
virtual PlusStatus | SetOutputImageOrientation (US_IMAGE_ORIENTATION imageOrientation) |
PlusStatus | SetPixelType (igsioCommon::VTKScalarPixelType pixelType) |
PlusStatus | SetPortName (const std::string &portName) |
PlusStatus | SetPortName (const char *portName) |
PlusStatus | SetReferenceCoordinateFrameName (const char *referenceName) |
PlusStatus | SetReferenceCoordinateFrameName (const std::string &referenceName) |
PlusStatus | SetSourceId (const std::string &aSourceId) |
virtual void | SetStartTime (double startTime) |
void | SetTimeStampReporting (bool enable) |
virtual void | SetType (DataSourceType) |
vtkGetMacroConst (Type, DataSourceType) | |
vtkGetMacroConst (FrameNumber, unsigned long) | |
vtkGetStdStringMacro (Id) | |
vtkGetStdStringMacro (ReferenceCoordinateFrameName) | |
vtkGetStdStringMacro (PortName) | |
virtual PlusStatus | WriteCompactConfiguration (vtkXMLDataElement *toolElement) |
virtual PlusStatus | WriteConfiguration (vtkXMLDataElement *toolElement) |
virtual PlusStatus | WriteToSequenceFile (const char *filename, bool useCompression=false) |
Static Public Member Functions | |
static int | IsTypeOf (const char *type) |
static vtkPlusDataSource * | New () |
static vtkPlusDataSource * | SafeDownCast (vtkObject *o) |
Static Public Attributes | |
static std::string | DATA_SOURCE_TYPE_FIELDDATA_TAG = "FieldData" |
static std::string | DATA_SOURCE_TYPE_TOOL_TAG = "Tool" |
static std::string | DATA_SOURCE_TYPE_VIDEO_TAG = "Video" |
Protected Member Functions | |
virtual vtkPlusBuffer * | GetBuffer () const |
vtkPlusDataSource () | |
~vtkPlusDataSource () | |
Protected Attributes | |
vtkPlusBuffer * | Buffer |
std::array< int, 3 > | ClipRectangleOrigin |
std::array< int, 3 > | ClipRectangleSize |
CustomPropertyMap | CustomProperties |
vtkPlusDevice * | Device |
unsigned long | FrameNumber |
std::string | Id |
FrameSizeType | InputFrameSize |
US_IMAGE_ORIENTATION | InputImageOrientation |
std::string | PortName |
std::string | ReferenceCoordinateFrameName |
DataSourceType | Type |
Interface to a 3D positioning tool, video source, or generalized data stream.
Definition at line 42 of file vtkPlusDataSource.h.
typedef vtkObject vtkPlusDataSource::Superclass |
Definition at line 55 of file vtkPlusDataSource.h.
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Definition at line 27 of file vtkPlusDataSource.cxx.
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Definition at line 51 of file vtkPlusDataSource.cxx.
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Add a frame plus a timestamp to the buffer with frame index. If the timestamp is less than or equal to the previous timestamp, or if the frame's format doesn't match the buffer's frame format, then the frame is not added to the buffer.
Definition at line 549 of file vtkPlusDataSource.cxx.
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Add a frame plus a timestamp to the buffer with frame index. If the timestamp is less than or equal to the previous timestamp, or if the frame's format doesn't match the buffer's frame format, then the frame is not added to the buffer.
Definition at line 555 of file vtkPlusDataSource.cxx.
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Add a frame plus a timestamp to the buffer with frame index. Additionally an optional field name&value can be added, which will be saved as a custom field of the added item. If the timestamp is less than or equal to the previous timestamp, or if the frame's format doesn't match the buffer's frame format, then the frame is not added to the buffer.
Definition at line 568 of file vtkPlusDataSource.cxx.
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Add a frame plus a timestamp to the buffer with frame index. Additionally an optional field name&value can be added, which will be saved as a custom field of the added item. If the timestamp is less than or equal to the previous timestamp, or if the frame's format doesn't match the buffer's frame format, then the frame is not added to the buffer.
Definition at line 577 of file vtkPlusDataSource.cxx.
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Add custom fields to the new item If the timestamp is less than or equal to the previous timestamp, or if the frame's format doesn't match the buffer's frame format, then the frame is not added to the buffer.
Definition at line 561 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::AddTimeStampedItem | ( | vtkMatrix4x4 * | matrix, |
ToolStatus | status, | ||
unsigned long | frameNumber, | ||
double | unfilteredTimestamp, | ||
double | filteredTimestamp = UNDEFINED_TIMESTAMP , |
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const igsioFieldMapType * | customFields = NULL |
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Add a matrix plus status to the list, with an exactly known timestamp value (e.g., provided by a high-precision hardware timer). If the timestamp is less than or equal to the previous timestamp, then nothing will be done. If filteredTiemstamp argument is undefined then the filtered timestamp will be computed from the input unfiltered timestamp.
Definition at line 921 of file vtkPlusDataSource.cxx.
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Clear buffer (set the buffer pointer to the first element)
Definition at line 841 of file vtkPlusDataSource.cxx.
void vtkPlusDataSource::DeepCopy | ( | const vtkPlusDataSource & | source | ) |
Make this tracker into a copy of another tracker. You should lock both of the tracker buffers before doing this.
Definition at line 211 of file vtkPlusDataSource.cxx.
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Make a copy of the buffer
Definition at line 913 of file vtkPlusDataSource.cxx.
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Access the data buffer
Definition at line 680 of file vtkPlusDataSource.cxx.
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Get the size of the buffer
Definition at line 853 of file vtkPlusDataSource.cxx.
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std::array< int, 3 > vtkPlusDataSource::GetClipRectangleOrigin | ( | ) | const |
Get the clip rectangle origin to apply to the image in pixel coordinates. If the ClipRectangleSize is (0,0) then the whole frame is captured.
Definition at line 233 of file vtkPlusDataSource.cxx.
std::array< int, 3 > vtkPlusDataSource::GetClipRectangleSize | ( | ) | const |
Get the clip rectangle size to apply to the image in pixel coordinates. If the ClipRectangleSize is (0,0) then the values are ignored and the whole frame is captured.
Definition at line 227 of file vtkPlusDataSource.cxx.
std::string vtkPlusDataSource::GetCustomProperty | ( | const std::string & | propertyName | ) |
Get a custom property string. If the property is not defined then an empty string is returned.
Definition at line 531 of file vtkPlusDataSource.cxx.
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Definition at line 266 of file vtkPlusDataSource.h.
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Get the frame rate from the buffer based on the number of frames in the buffer and the elapsed time. Ideal frame rate shows the mean of the frame periods in the buffer based on the frame number difference (aka the device frame rate). If framePeriodStdevSecPtr is not null, then the standard deviation of the frame period is computed as well (in seconds) and stored at the specified address.
Definition at line 939 of file vtkPlusDataSource.cxx.
US_IMAGE_TYPE vtkPlusDataSource::GetImageType | ( | ) |
Get the image type (B-mode, RF, ...)
Definition at line 583 of file vtkPlusDataSource.cxx.
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Get the index assigned by the data acquisition system (usually a counter) from the buffer by frame UID.
Definition at line 933 of file vtkPlusDataSource.cxx.
FrameSizeType vtkPlusDataSource::GetInputFrameSize | ( | ) | const |
Get the input frame size in pixel
Definition at line 662 of file vtkPlusDataSource.cxx.
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Get the image orientation of the input data (MF, MN, ...). The internal buffer's image orientation and the output is always the standard MF (for B-mode) or FM (for RF-mode).
Definition at line 727 of file vtkPlusDataSource.cxx.
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Definition at line 787 of file vtkPlusDataSource.cxx.
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Returns true if the latest item contains valid field data
Definition at line 805 of file vtkPlusDataSource.cxx.
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Returns true if the latest item contains valid transform data
Definition at line 799 of file vtkPlusDataSource.cxx.
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Returns true if the latest item contains valid video data
Definition at line 793 of file vtkPlusDataSource.cxx.
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Definition at line 781 of file vtkPlusDataSource.cxx.
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Get the most recent frame from the buffer
Definition at line 817 of file vtkPlusDataSource.cxx.
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Get latest timestamp in the buffer
Definition at line 859 of file vtkPlusDataSource.cxx.
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Get the local time offset in seconds (global = local + offset)
Definition at line 883 of file vtkPlusDataSource.cxx.
int vtkPlusDataSource::GetNumberOfBytesPerPixel | ( | ) |
Get the number of bytes per pixel It is the number of bytes per scalar multiplied by the number of scalar components.
Definition at line 927 of file vtkPlusDataSource.cxx.
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Get the number of items in the buffer
Definition at line 769 of file vtkPlusDataSource.cxx.
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Get the number of scalar components
Definition at line 739 of file vtkPlusDataSource.cxx.
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Get buffer item unique ID
Definition at line 775 of file vtkPlusDataSource.cxx.
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Get the oldest frame from buffer
Definition at line 823 of file vtkPlusDataSource.cxx.
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Get oldest timestamp in the buffer
Definition at line 865 of file vtkPlusDataSource.cxx.
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Get the output frame size in pixel. If no clipping rectangle is set then the output frame size is the clipping rectangle size; otherwise it is the input frame size
Definition at line 668 of file vtkPlusDataSource.cxx.
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Definition at line 674 of file vtkPlusDataSource.cxx.
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Definition at line 721 of file vtkPlusDataSource.cxx.
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Get the pixel type
Definition at line 745 of file vtkPlusDataSource.cxx.
std::string vtkPlusDataSource::GetSourceId | ( | ) | const |
Definition at line 139 of file vtkPlusDataSource.cxx.
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Get recording start time
Definition at line 763 of file vtkPlusDataSource.cxx.
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Get a frame with the specified frame uid from the buffer
Definition at line 811 of file vtkPlusDataSource.cxx.
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Get a frame that was acquired at the specified time from buffer
Definition at line 829 of file vtkPlusDataSource.cxx.
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Get video buffer item timestamp
Definition at line 871 of file vtkPlusDataSource.cxx.
bool vtkPlusDataSource::GetTimeStampReporting | ( | ) |
If TimeStampReporting is enabled then all filtered and unfiltered timestamp values will be saved in a table for diagnostic purposes.
Definition at line 901 of file vtkPlusDataSource.cxx.
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Get the table report of the timestamped buffer
Definition at line 889 of file vtkPlusDataSource.cxx.
std::string vtkPlusDataSource::GetTransformName | ( | ) | const |
Definition at line 523 of file vtkPlusDataSource.cxx.
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Update a field in the specified stream buffer item
Definition at line 835 of file vtkPlusDataSource.cxx.
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Definition at line 61 of file vtkPlusDataSource.cxx.
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Read main configuration from xml data
Definition at line 251 of file vtkPlusDataSource.cxx.
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Set the size of the buffer, i.e. the maximum number of video frames that it will hold. The default is 30.
Definition at line 847 of file vtkPlusDataSource.cxx.
void vtkPlusDataSource::SetClipRectangleOrigin | ( | const std::array< int, 3 > | _arg | ) |
Set the clip rectangle origin to apply to the image in pixel coordinates. If the ClipRectangleSize is (0,0) then the whole frame is captured.
Definition at line 245 of file vtkPlusDataSource.cxx.
void vtkPlusDataSource::SetClipRectangleSize | ( | const std::array< int, 3 > | _arg | ) |
Set the clip rectangle size to apply to the image in pixel coordinates. If the ClipRectangleSize is (0,0) then the values are ignored and the whole frame is captured. Width of the ClipRectangle typically have to be a multiple of 4.
Definition at line 239 of file vtkPlusDataSource.cxx.
void vtkPlusDataSource::SetCustomProperty | ( | const std::string & | propertyName, |
const std::string & | propertyValue | ||
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Set a custom property string. Custom properties are useful because custom information can be stored for each tool in the same class object where standard properties of the tool are stored.
Definition at line 543 of file vtkPlusDataSource.cxx.
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Get the device which owns this source.
Definition at line 265 of file vtkPlusDataSource.h.
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PlusStatus vtkPlusDataSource::SetId | ( | const char * | aSourceId | ) |
Set source Id. SourceId is used to identify the data source among all the data sources provided by the device therefore it must be unique
Definition at line 102 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetId | ( | const std::string & | aSourceId | ) |
Definition at line 113 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetImageType | ( | US_IMAGE_TYPE | imageType | ) |
Set the image type. Does not convert the pixel values.
Definition at line 589 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetInputFrameSize | ( | unsigned int | x, |
unsigned int | y, | ||
unsigned int | z | ||
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Set the non-clipped input frame size in pixel
Definition at line 595 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetInputFrameSize | ( | const FrameSizeType & | frameSize | ) |
Set the non-clipped input frame size in pixel
Definition at line 656 of file vtkPlusDataSource.cxx.
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Set the image orientation of the input data (MF, MN, ...). The internal buffer's image orientation and the output is always the standard MF (for B-mode) or FM (for RF-mode), so the input images are reoriented as needed when AddItem(...) is called. This method is necessary for initializing the storage buffers and also serves as a convenient storage for the image orientation of the hardware device.
Definition at line 686 of file vtkPlusDataSource.cxx.
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Set the local time offset in seconds (global = local + offset)
Definition at line 877 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetNumberOfScalarComponents | ( | unsigned int | numberOfScalarComponents | ) |
Set the number of scalar components
Definition at line 733 of file vtkPlusDataSource.cxx.
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Set the image orientation of the internal buffer. It has to be MF for all imaging modes except RF (for that the orientation has to be FM).
Definition at line 709 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetPixelType | ( | igsioCommon::VTKScalarPixelType | pixelType | ) |
Set the pixel type
Definition at line 751 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetPortName | ( | const std::string & | portName | ) |
Set port name. Port name is used to identify the source among all the sources provided by the device therefore it must be unique
Definition at line 188 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetPortName | ( | const char * | portName | ) |
Definition at line 176 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetReferenceCoordinateFrameName | ( | const char * | referenceName | ) |
Set reference name. Reference name is used to convey context about the coordinate frame that the tool is based
Definition at line 165 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetReferenceCoordinateFrameName | ( | const std::string & | referenceName | ) |
Definition at line 145 of file vtkPlusDataSource.cxx.
PlusStatus vtkPlusDataSource::SetSourceId | ( | const std::string & | aSourceId | ) |
Definition at line 133 of file vtkPlusDataSource.cxx.
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Set recording start time
Definition at line 757 of file vtkPlusDataSource.cxx.
void vtkPlusDataSource::SetTimeStampReporting | ( | bool | enable | ) |
If TimeStampReporting is enabled then all filtered and unfiltered timestamp values will be saved in a table for diagnostic purposes.
Definition at line 895 of file vtkPlusDataSource.cxx.
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vtkPlusDataSource::vtkGetMacroConst | ( | Type | , |
DataSourceType | |||
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Get type: video or tool.
vtkPlusDataSource::vtkGetMacroConst | ( | FrameNumber | , |
unsigned long | |||
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Get the frame number (some devices have frame numbering, otherwise just increment if new frame received)
vtkPlusDataSource::vtkGetStdStringMacro | ( | Id | ) |
Get source id
vtkPlusDataSource::vtkGetStdStringMacro | ( | ReferenceCoordinateFrameName | ) |
Get the reference coordinate frame name
vtkPlusDataSource::vtkGetStdStringMacro | ( | PortName | ) |
Get port name. Port name is used to identify the tool among all the tools provided by the tracker device.
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WriteCompactConfiguration is called when a channel is populating its tool data source links, most usages should call WriteConfiguration
Definition at line 498 of file vtkPlusDataSource.cxx.
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Write main configuration to xml data
Definition at line 437 of file vtkPlusDataSource.cxx.
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Dump the current state of the video buffer to metafile
Definition at line 907 of file vtkPlusDataSource.cxx.
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Definition at line 380 of file vtkPlusDataSource.h.
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Crop rectangle origin for this data source
Definition at line 385 of file vtkPlusDataSource.h.
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Crop rectangle size for this data source
Definition at line 387 of file vtkPlusDataSource.h.
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Definition at line 382 of file vtkPlusDataSource.h.
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Definition at line 51 of file vtkPlusDataSource.h.
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Definition at line 49 of file vtkPlusDataSource.h.
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Definition at line 50 of file vtkPlusDataSource.h.
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Definition at line 367 of file vtkPlusDataSource.h.
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Definition at line 375 of file vtkPlusDataSource.h.
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Definition at line 377 of file vtkPlusDataSource.h.
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Definition at line 389 of file vtkPlusDataSource.h.
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The orientation of the image outputted by the device
Definition at line 371 of file vtkPlusDataSource.h.
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Definition at line 369 of file vtkPlusDataSource.h.
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Definition at line 378 of file vtkPlusDataSource.h.
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Definition at line 373 of file vtkPlusDataSource.h.